Happy Belly Bioinformatics
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Unix
Unix home
Getting a Unix-like env.
Unix Crash Course!
1. Getting started
2. Files and directories
3. Redirectors & wildcards
4. Six glorious commands
5. Variables and For loops
Scripting Intro
Conda Intro
Screen Intro
Modifying our PATH
More automation power
Using NCBI's EDirect
Why is this all worth it?
Installing tools
Other great resources
R
R home
Intro to R
Installing R packages
R/RStudio with conda
Other great resources
Amplicon analysis
Amplicon Home
Demultiplexing
Full Ex. workflow
16S/18S together
Genomics
Genomics Home
Where to start?
De novo assembly
MAGs from MGs
Phylogenomics
Modifying your *bash* profile
Modifying your profile
Coming soon…
Bash
UNDER CONSTRUCTION
Coming soon…
Feel free to
bug me
to expedite 😊
